HL_7UPH_022

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UUUUCAGAGAUGAGAA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_022 not in the Motif Atlas

Homologous match to HL_5J7L_022

Geometric discrepancy: 0.55

The information below is about HL_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06285.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|U|1006
7UPH|1|I|U|1007
7UPH|1|I|U|1008
7UPH|1|I|U|1009
7UPH|1|I|C|1010
7UPH|1|I|A|1011
7UPH|1|I|G|1012
7UPH|1|I|A|1013
7UPH|1|I|G|1014
7UPH|1|I|A|1015
7UPH|1|I|U|1016
7UPH|1|I|G|1017
7UPH|1|I|A|1018
7UPH|1|I|G|1019
7UPH|1|I|A|1020
7UPH|1|I|A|1021

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain A

30S ribosomal protein S14

Chain F

30S ribosomal protein S19