HL_7UPH_028
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UPH_028 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.2355
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7UPH|1|I|C|1313
7UPH|1|I|U|1314
7UPH|1|I|G|1315
7UPH|1|I|C|1316
7UPH|1|I|A|1317
7UPH|1|I|A|1318
7UPH|1|I|C|1319
7UPH|1|I|U|1320
7UPH|1|I|C|1321
7UPH|1|I|G|1322
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain A
- 30S ribosomal protein S14
- Chain F
- 30S ribosomal protein S19
- Chain h
- 30S ribosomal protein S13
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