3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
7UPH|1|I|A|1625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UPH_033 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.1227
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.2
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

7UPH|1|I|G|1623
7UPH|1|I|G|1624
7UPH|1|I|A|1625
7UPH|1|I|A|1626
7UPH|1|I|A|1627
7UPH|1|I|C|1628

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain k
50S ribosomal protein L34
Chain s
50S ribosomal protein L23

Coloring options:


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