HL_7UPH_036

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7UPH|1|I|A|1696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_036 not in the Motif Atlas

Geometric match to HL_5TBW_001

Geometric discrepancy: 0.224

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7UPH|1|I|G|1694
7UPH|1|I|A|1695
7UPH|1|I|A|1696
7UPH|1|I|A|1697
7UPH|1|I|C|1698
7UPH|1|I|A|1699
7UPH|1|I|U|1700
7UPH|1|I|C|1701

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain w

50S ribosomal protein L28