HL_7UPH_039

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7UPH|1|I|A|1811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_039 not in the Motif Atlas

Geometric match to HL_4WF9_010

Geometric discrepancy: 0.3648

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7UPH|1|I|C|1805
7UPH|1|I|U|1806
7UPH|1|I|G|1807
7UPH|1|I|G|1808
7UPH|1|I|A|1809
7UPH|1|I|A|1810
7UPH|1|I|A|1811
7UPH|1|I|G|1812

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain t

50S ribosomal protein L24