HL_7UPH_041

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7UPH|1|I|G|1829, 7UPH|1|I|A|1830, 7UPH|1|I|C|1831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_041 not in the Motif Atlas

Geometric match to HL_4V9F_012

Geometric discrepancy: 0.3754

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7UPH|1|I|G|1827
7UPH|1|I|U|1828
7UPH|1|I|G|1829
7UPH|1|I|A|1830
7UPH|1|I|C|1831
7UPH|1|I|A|1832
7UPH|1|I|G|1833
7UPH|1|I|C|1834
7UPH|1|I|C|1835

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain t

50S ribosomal protein L24