HL_7UPH_042

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

7UPH|1|I|G|1886, 7UPH|1|I|G|1889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_042 not in the Motif Atlas

Geometric match to HL_4WF9_013

Geometric discrepancy: 0.3819

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|G|1881
7UPH|1|I|A|1882
7UPH|1|I|C|1883
7UPH|1|I|A|1884
7UPH|1|I|C|1885
7UPH|1|I|G|1886
7UPH|1|I|U|1887
7UPH|1|I|G|1888
7UPH|1|I|G|1889
7UPH|1|I|U|1890
7UPH|1|I|A|1891
7UPH|1|I|U|1892
7UPH|1|I|C|1893

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain w

50S ribosomal protein L28