HL_7UPH_043

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7UPH|1|I|G|1911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_043 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.308

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7UPH|1|I|G|1910
7UPH|1|I|G|1911
7UPH|1|I|A|1912
7UPH|1|I|C|1913
7UPH|1|I|C|1914
7UPH|1|I|A|1915
7UPH|1|I|U|1916
7UPH|1|I|C|1917

Current chains

Chain I

Tethered rRNA

Nearby chains