HL_7UPH_053

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

7UPH|1|I|A|2281, 7UPH|1|I|G|2284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_053 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3029

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|G|2278
7UPH|1|I|U|2279
7UPH|1|I|G|2280
7UPH|1|I|A|2281
7UPH|1|I|A|2282
7UPH|1|I|A|2283
7UPH|1|I|G|2284
7UPH|1|I|G|2285
7UPH|1|I|C|2286

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2