HL_7UPH_058

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7UPH|1|I|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_058 not in the Motif Atlas

Geometric match to HL_1MMS_001

Geometric discrepancy: 0.2674

The information below is about HL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|C|2558
7UPH|1|I|U|2559
7UPH|1|I|U|2560
7UPH|1|I|A|2561
7UPH|1|I|G|2562
7UPH|1|I|A|2563
7UPH|1|I|A|2564
7UPH|1|I|G|2565
7UPH|1|I|C|2566
7UPH|1|I|A|2567
7UPH|1|I|G|2568

Current chains

Chain I

Tethered rRNA

Nearby chains