HL_7UPH_065

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7UPH|1|I|U|2890, 7UPH|1|I|U|2891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_065 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.3305

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|G|2883
7UPH|1|I|U|2884
7UPH|1|I|U|2885
7UPH|1|I|A|2886
7UPH|1|I|A|2887
7UPH|1|I|U|2888
7UPH|1|I|A|2889
7UPH|1|I|U|2890
7UPH|1|I|U|2891
7UPH|1|I|C|2892

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain s

50S ribosomal protein L23