HL_7UPH_071

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

7UPH|1|I|A|3128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_071 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.2309

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7UPH|1|I|A|3124
7UPH|1|I|G|3125
7UPH|1|I|A|3126
7UPH|1|I|G|3127
7UPH|1|I|A|3128
7UPH|1|I|A|3129
7UPH|1|I|U|3130

Current chains

Chain I

Tethered rRNA

Nearby chains