HL_7UPH_079

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7UPH|1|I|U|3445, 7UPH|1|I|U|3449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_079 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.2203

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7UPH|1|I|G|3443
7UPH|1|I|G|3444
7UPH|1|I|U|3445
7UPH|1|I|A|3446
7UPH|1|I|A|3447
7UPH|1|I|G|3448
7UPH|1|I|U|3449
7UPH|1|I|U|3450
7UPH|1|I|C|3451

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain S

50S ribosomal protein L14