HL_7UPH_084

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7UPH|1|I|A|3762, 7UPH|1|I|C|3769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_084 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.1894

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|C|3758
7UPH|1|I|U|3759
7UPH|1|I|A|3760
7UPH|1|I|A|3761
7UPH|1|I|A|3762
7UPH|1|I|G|3763
7UPH|1|I|A|3764
7UPH|1|I|G|3765
7UPH|1|I|U|3766
7UPH|1|I|A|3767
7UPH|1|I|A|3768
7UPH|1|I|C|3769
7UPH|1|I|G|3770

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain v

50S ribosomal protein L27