HL_7UPH_096

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7UPH|1|I|G|4245, 7UPH|1|I|C|4249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_096 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.3247

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|C|4239
7UPH|1|I|U|4240
7UPH|1|I|G|4241
7UPH|1|I|A|4242
7UPH|1|I|A|4243
7UPH|1|I|A|4244
7UPH|1|I|G|4245
7UPH|1|I|C|4246
7UPH|1|I|A|4247
7UPH|1|I|U|4248
7UPH|1|I|C|4249
7UPH|1|I|U|4250
7UPH|1|I|A|4251
7UPH|1|I|A|4252
7UPH|1|I|G|4253

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36