HL_7UPH_108

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7UPH|1|I|U|2452, 7UPH|1|I|C|2455

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_108 not in the Motif Atlas

Geometric match to HL_5J7L_211

Geometric discrepancy: 0.3599

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7UPH|1|I|PSU|2449
7UPH|1|I|G|2450
7UPH|1|I|C|2451
7UPH|1|I|U|2452
7UPH|1|I|A|2453
7UPH|1|I|A|2454
7UPH|1|I|C|2455
7UPH|1|I|G|2456

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain U

50S ribosomal protein L16