HL_7UQZ_073
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- (A2M)CGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 7UQZ|1|1|U|879, 7UQZ|1|1|A|883, 7UQZ|1|1|A|884
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UQZ_073 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.3824
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
7UQZ|1|1|A2M|876
7UQZ|1|1|C|877
7UQZ|1|1|G|878
7UQZ|1|1|U|879
7UQZ|1|1|G|880
7UQZ|1|1|C|881
7UQZ|1|1|A|882
7UQZ|1|1|A|883
7UQZ|1|1|A|884
7UQZ|1|1|U|885
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain j
- 60S ribosomal protein L37-A
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