3D structure

PDB id
7V08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.36 Å

Loop

Sequence
GUGUAAAAC
Length
9 nucleotides
Bulged bases
7V08|1|1|U|689, 7V08|1|1|A|691
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7V08_015 not in the Motif Atlas
Homologous match to HL_5TBW_015
Geometric discrepancy: 0.0725
The information below is about HL_5TBW_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53971.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7V08|1|1|G|686
7V08|1|1|U|687
7V08|1|1|G|688
7V08|1|1|U|689
7V08|1|1|A|690
7V08|1|1|A|691
7V08|1|1|A|692
7V08|1|1|A|693
7V08|1|1|C|694

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4-A
Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain Y
60S ribosomal protein L26-A

Coloring options:


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