HL_7V08_046
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- UCUAAUU(1MA)AAA
- Length
- 11 nucleotides
- Bulged bases
- 7V08|1|1|A|2138, 7V08|1|1|A|2139, 7V08|1|1|U|2140, 7V08|1|1|A|2144
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7V08_046 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.0978
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
7V08|1|1|U|2135
7V08|1|1|C|2136
7V08|1|1|U|2137
7V08|1|1|A|2138
7V08|1|1|A|2139
7V08|1|1|U|2140
7V08|1|1|U|2141
7V08|1|1|1MA|2142
7V08|1|1|A|2143
7V08|1|1|A|2144
7V08|1|1|A|2145
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain j
- 60S ribosomal protein L37-A
- Chain m
- Nucleolar GTP-binding protein 2
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