HL_7V2O_015

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2O_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1211

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7V2O|1|A|C|673
7V2O|1|A|G|674
7V2O|1|A|G|675
7V2O|1|A|U|676
7V2O|1|A|G|677
7V2O|1|A|A|678
7V2O|1|A|A|679
7V2O|1|A|A|680
7V2O|1|A|U|681
7V2O|1|A|G|682

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain K

30S ribosomal protein S11