HL_7WTL_019

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7WTL|1|C2|U|830, 7WTL|1|C2|G|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTL_019 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.3126

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTL|1|C2|A|829
7WTL|1|C2|U|830
7WTL|1|C2|U|831
7WTL|1|C2|U|832
7WTL|1|C2|U|833
7WTL|1|C2|G|834
7WTL|1|C2|U|835
7WTL|1|C2|U|836
7WTL|1|C2|G|837
7WTL|1|C2|G|838
7WTL|1|C2|U|839
7WTL|1|C2|U|840
7WTL|1|C2|U|841
7WTL|1|C2|C|842
7WTL|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S11-A