HL_7WTM_020

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

7WTM|1|C2|U|903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTM_020 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.1653

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7WTM|1|C2|A|900
7WTM|1|C2|G|901
7WTM|1|C2|G|902
7WTM|1|C2|U|903
7WTM|1|C2|G|904
7WTM|1|C2|A|905
7WTM|1|C2|A|906
7WTM|1|C2|A|907
7WTM|1|C2|U|908
7WTM|1|C2|U|909

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain SO

40S ribosomal protein S14-A