HL_7WTM_022

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7WTM|1|C2|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTM_022 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3374

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7WTM|1|C2|G|997
7WTM|1|C2|A|998
7WTM|1|C2|U|999
7WTM|1|C2|C|1000
7WTM|1|C2|A|1001
7WTM|1|C2|G|1002
7WTM|1|C2|A|1003
7WTM|1|C2|U|1004
7WTM|1|C2|A|1005
7WTM|1|C2|C|1006
7WTM|1|C2|C|1007

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain JL

Dimethyladenosine transferase

Chain SO

40S ribosomal protein S14-A