HL_7WTO_006

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

7WTO|1|C2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTO_006 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.1157

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7WTO|1|C2|G|243
7WTO|1|C2|A|244
7WTO|1|C2|U|245
7WTO|1|C2|G|246
7WTO|1|C2|A|247
7WTO|1|C2|U|248
7WTO|1|C2|U|249
7WTO|1|C2|C|250

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SL

40S ribosomal protein S11-A