HL_7WTO_008

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7WTO|1|C2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTO_008 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.1141

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7WTO|1|C2|G|330
7WTO|1|C2|A|331
7WTO|1|C2|U|332
7WTO|1|C2|A|333
7WTO|1|C2|G|334
7WTO|1|C2|U|335
7WTO|1|C2|G|336
7WTO|1|C2|G|337
7WTO|1|C2|C|338

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A