HL_7WTP_019

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTP_019 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.2846

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTP|1|C2|A|829
7WTP|1|C2|U|830
7WTP|1|C2|U|831
7WTP|1|C2|U|832
7WTP|1|C2|U|833
7WTP|1|C2|G|834
7WTP|1|C2|U|835
7WTP|1|C2|U|836
7WTP|1|C2|G|837
7WTP|1|C2|G|838
7WTP|1|C2|U|839
7WTP|1|C2|U|840
7WTP|1|C2|U|841
7WTP|1|C2|C|842
7WTP|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S11-A