HL_7WTQ_019

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTQ_019 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.3222

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTQ|1|C2|A|829
7WTQ|1|C2|U|830
7WTQ|1|C2|U|831
7WTQ|1|C2|U|832
7WTQ|1|C2|U|833
7WTQ|1|C2|G|834
7WTQ|1|C2|U|835
7WTQ|1|C2|U|836
7WTQ|1|C2|G|837
7WTQ|1|C2|G|838
7WTQ|1|C2|U|839
7WTQ|1|C2|U|840
7WTQ|1|C2|U|841
7WTQ|1|C2|C|842
7WTQ|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S11-A