HL_7WTS_023

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7WTS|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTS_023 not in the Motif Atlas

Geometric match to HL_6DLR_003

Geometric discrepancy: 0.3969

The information below is about HL_6DLR_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7WTS|1|2|A|1295
7WTS|1|2|U|1296
7WTS|1|2|U|1297
7WTS|1|2|G|1298
7WTS|1|2|A|1299
7WTS|1|2|U|1300
7WTS|1|2|A|1301
7WTS|1|2|G|1302
7WTS|1|2|C|1303
7WTS|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains