HL_7WTU_023

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7WTU|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTU_023 not in the Motif Atlas

Geometric match to HL_7MLW_003

Geometric discrepancy: 0.3932

The information below is about HL_7MLW_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7WTU|1|2|A|1295
7WTU|1|2|U|1296
7WTU|1|2|U|1297
7WTU|1|2|G|1298
7WTU|1|2|A|1299
7WTU|1|2|U|1300
7WTU|1|2|A|1301
7WTU|1|2|G|1302
7WTU|1|2|C|1303
7WTU|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain w

Bystin