HL_7WTV_028

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7WTV|1|2|U|1621, 7WTV|1|2|U|1622, 7WTV|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTV_028 not in the Motif Atlas

Geometric match to HL_4V88_219

Geometric discrepancy: 0.2652

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTV|1|2|A|1614
7WTV|1|2|U|1615
7WTV|1|2|U|1616
7WTV|1|2|G|1617
7WTV|1|2|C|1618
7WTV|1|2|A|1619
7WTV|1|2|A|1620
7WTV|1|2|U|1621
7WTV|1|2|U|1622
7WTV|1|2|A|1623
7WTV|1|2|U|1624
7WTV|1|2|U|1625

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain u

Pre-rRNA-processing protein TSR1 homolog