HL_7WU0_026

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7WU0|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WU0_026 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1773

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7WU0|1|2|G|1366
7WU0|1|2|U|1367
7WU0|1|2|U|1368
7WU0|1|2|A|1369
7WU0|1|2|A|1370
7WU0|1|2|U|1371
7WU0|1|2|U|1372
7WU0|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain y

RNA-binding protein NOB1