HL_7XAM_069

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7XAM|1|A|G|2975, 7XAM|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0878

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

7XAM|1|A|C|2969
7XAM|1|A|U|2970
7XAM|1|A|G|2971
7XAM|1|A|A|2972
7XAM|1|A|A|2973
7XAM|1|A|A|2974
7XAM|1|A|G|2975
7XAM|1|A|C|2976
7XAM|1|A|A|2977
7XAM|1|A|U|2978
7XAM|1|A|C|2979
7XAM|1|A|U|2980
7XAM|1|A|A|2981
7XAM|1|A|A|2982
7XAM|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36