HL_7XNX_034

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_034 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1749

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7XNX|1|L1|U|2006
7XNX|1|L1|G|2007
7XNX|1|L1|U|2008
7XNX|1|L1|A|2009
7XNX|1|L1|A|2010
7XNX|1|L1|C|2011
7XNX|1|L1|A|2012
7XNX|1|L1|A|2013

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40