HL_7XNX_054

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

7XNX|1|L1|A|3642, 7XNX|1|L1|A|3643, 7XNX|1|L1|U|3644, 7XNX|1|L1|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_054 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1664

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7XNX|1|L1|U|3639
7XNX|1|L1|U|3640
7XNX|1|L1|U|3641
7XNX|1|L1|A|3642
7XNX|1|L1|A|3643
7XNX|1|L1|U|3644
7XNX|1|L1|U|3645
7XNX|1|L1|A|3646
7XNX|1|L1|A|3647
7XNX|1|L1|A|3648
7XNX|1|L1|A|3649

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37