HL_7XNX_057
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUAAC(B8H)A(PSU)GAC
- Length
- 11 nucleotides
- Bulged bases
- 7XNX|1|L1|A|3760, 7XNX|1|L1|C|3761, 7XNX|1|L1|A|3763
- QA status
- Modified nucleotides: B8H, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNX_057 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.2668
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7XNX|1|L1|G|3757
7XNX|1|L1|U|3758
7XNX|1|L1|A|3759
7XNX|1|L1|A|3760
7XNX|1|L1|C|3761
7XNX|1|L1|B8H|3762
7XNX|1|L1|A|3763
7XNX|1|L1|PSU|3764
7XNX|1|L1|G|3765
7XNX|1|L1|A|3766
7XNX|1|L1|C|3767
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain CE
- Ubiquitin-40S ribosomal protein S27a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: