HL_7XNY_004
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 7XNY|1|L1|G|135, 7XNY|1|L1|C|136
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNY_004 not in the Motif Atlas
- Homologous match to HL_8C3A_004
- Geometric discrepancy: 0.4684
- The information below is about HL_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86929.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7XNY|1|L1|C|131
7XNY|1|L1|G|132
7XNY|1|L1|C|133
7XNY|1|L1|G|134
7XNY|1|L1|G|135
7XNY|1|L1|C|136
7XNY|1|L1|G|137
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain L3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
Coloring options: