HL_7XNY_005

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7XNY|1|L1|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_005 not in the Motif Atlas

Geometric match to HL_1P6V_004

Geometric discrepancy: 0.3517

The information below is about HL_1P6V_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7XNY|1|L1|U|204
7XNY|1|L1|C|205
7XNY|1|L1|U|206
7XNY|1|L1|G|207
7XNY|1|L1|A|208
7XNY|1|L1|U|209
7XNY|1|L1|C|210
7XNY|1|L1|G|211

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32