HL_7XNY_011

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_011 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3216

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7XNY|1|L1|U|392
7XNY|1|L1|U|393
7XNY|1|L1|G|394
7XNY|1|L1|A|395
7XNY|1|L1|A|396
7XNY|1|L1|G|397
7XNY|1|L1|A2M|398
7XNY|1|L1|G|399

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17