HL_7XNY_024

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7XNY|1|L1|A|1630, 7XNY|1|L1|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_024 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0711

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|G|1627
7XNY|1|L1|C|1628
7XNY|1|L1|G|1629
7XNY|1|L1|A|1630
7XNY|1|L1|A|1631
7XNY|1|L1|A|1632
7XNY|1|L1|G|1633
7XNY|1|L1|A|1634
7XNY|1|L1|C|1635

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37