HL_7XNY_025

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

7XNY|1|L1|C|1676, 7XNY|1|L1|C|1678, 7XNY|1|L1|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_025 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0889

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|C|1675
7XNY|1|L1|C|1676
7XNY|1|L1|PSU|1677
7XNY|1|L1|C|1678
7XNY|1|L1|A|1679
7XNY|1|L1|G|1680

Current chains

Chain L1

28S rRNA

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a