HL_7XNY_029

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_029 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.0724

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|G|1886
7XNY|1|L1|G|1887
7XNY|1|L1|A|1888
7XNY|1|L1|U|1889
7XNY|1|L1|G|1890
7XNY|1|L1|A|1891
7XNY|1|L1|A|1892
7XNY|1|L1|C|1893

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L2

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a