HL_7XNY_030

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7XNY|1|L1|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_030 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.4185

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7XNY|1|L1|C|1978
7XNY|1|L1|A|1979
7XNY|1|L1|U|1980
7XNY|1|L1|G|1981
7XNY|1|L1|G|1982
7XNY|1|L1|A|1983
7XNY|1|L1|A|1984
7XNY|1|L1|G|1985
7XNY|1|L1|U|1986
7XNY|1|L1|C|1987
7XNY|1|L1|G|1988

Current chains

Chain L1

28S rRNA

Nearby chains