HL_7XNY_049

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUCGCGGCC

Length

9 nucleotides

Bulged bases

7XNY|1|L1|U|2908, 7XNY|1|L1|C|2909, 7XNY|1|L1|C|3584

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_049 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3721

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|G|2907
7XNY|1|L1|U|2908
7XNY|1|L1|C|2909
7XNY|1|L1|G|2910
7XNY|1|L1|C|3584
7XNY|1|L1|G|3585
7XNY|1|L1|G|3586
7XNY|1|L1|C|3587
7XNY|1|L1|C|3588

Current chains

Chain L1

28S rRNA

Nearby chains