HL_7XNY_059

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

7XNY|1|L1|C|4142, 7XNY|1|L1|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_059 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3295

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7XNY|1|L1|C|4138
7XNY|1|L1|G|4139
7XNY|1|L1|C|4140
7XNY|1|L1|G|4141
7XNY|1|L1|C|4142
7XNY|1|L1|G|4143
7XNY|1|L1|C|4144
7XNY|1|L1|C|4145
7XNY|1|L1|G|4146

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a