HL_7XNY_061

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

7XNY|1|L1|A|4214, 7XNY|1|L1|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_061 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1144

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

7XNY|1|L1|U|4210
7XNY|1|L1|C|4211
7XNY|1|L1|A|4212
7XNY|1|L1|A|4213
7XNY|1|L1|A|4214
7XNY|1|L1|C|4215
7XNY|1|L1|G|4216
7XNY|1|L1|G|4217
7XNY|1|L1|U|4218
7XNY|1|L1|A|4219
7XNY|1|L1|6MZ|4220
7XNY|1|L1|C|4221
7XNY|1|L1|G|4222

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LI

Ribosomal protein L10 isoform A

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29