HL_7XNY_068

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7XNY|1|L1|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_068 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0882

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7XNY|1|L1|A|4474
7XNY|1|L1|G|4475
7XNY|1|L1|C|4476
7XNY|1|L1|A|4477
7XNY|1|L1|G|4478
7XNY|1|L1|A|4479
7XNY|1|L1|A|4480
7XNY|1|L1|U|4481

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40