HL_7XNY_081
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7XNY|1|L3|A|82, 7XNY|1|L3|A|84, 7XNY|1|L3|U|85, 7XNY|1|L3|U|86
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNY_081 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5792
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7XNY|1|L3|G|68
7XNY|1|L3|U|69
7XNY|1|L3|G|70
7XNY|1|L3|A|71
7XNY|1|L3|A|72
7XNY|1|L3|U|73
7XNY|1|L3|U|74
7XNY|1|L3|OMG|75
7XNY|1|L3|C|76
7XNY|1|L3|A|77
7XNY|1|L3|G|78
7XNY|1|L3|G|79
7XNY|1|L3|A|80
7XNY|1|L3|C|81
7XNY|1|L3|A|82
7XNY|1|L3|C|83
7XNY|1|L3|A|84
7XNY|1|L3|U|85
7XNY|1|L3|U|86
7XNY|1|L3|G|87
7XNY|1|L3|A|88
7XNY|1|L3|U|89
7XNY|1|L3|C|90
Current chains
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: