HL_7XNY_086

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

7XNY|1|S2|A|158, 7XNY|1|S2|U|160, 7XNY|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_086 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1645

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7XNY|1|S2|G|156
7XNY|1|S2|U|157
7XNY|1|S2|A|158
7XNY|1|S2|A2M|159
7XNY|1|S2|U|160
7XNY|1|S2|U|161
7XNY|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24