HL_7XNY_108
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7XNY|1|S2|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNY_108 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.0976
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7XNY|1|S2|G|1245
7XNY|1|S2|A|1246
7XNY|1|S2|C|1247
7XNY|1|S2|B8N|1248
7XNY|1|S2|C|1249
7XNY|1|S2|A|1250
7XNY|1|S2|A|1251
7XNY|1|S2|C|1252
7XNY|1|S2|A|1253
7XNY|1|S2|C|1254
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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