HL_7XNY_118

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

7XNY|1|S2|G|1849

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_118 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.0945

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7XNY|1|S2|G|1847
7XNY|1|S2|U|1848
7XNY|1|S2|G|1849
7XNY|1|S2|MA6|1850
7XNY|1|S2|MA6|1851
7XNY|1|S2|C|1852

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41